| Interactors | Synonyms | PPI detection method | UNIPROT ID |
| Actin-related protein 6 | ACTR6 | interologs mapping | Q9GZN1 |
| Carbonic anhydrase-related protein | CA8 | predictive text mining | Q32MY2 |
| Chromosome 5 open reading frame 4, isoform CRA_a | C5orf4 | predictive text mining | Q96IV6 |
| Cystin-1 | CYS1 | predictive text mining | Q717R9 |
| DNA-binding protein RFX2 | RFX2 | predictive text mining | Q8SNA2 |
| Fibroblast growth factor 8 | FGF8 | predictive text mining | P55075 |
| Fibroblast growth factor receptor 1 | FGFR1 | predictive text mining | P11362 |
| Forkhead box protein J1 | FOXJ1 | predictive text mining | Q92949 |
| KIAA1549L or C11orf41 | two hybrid | Q6ZVL6 | |
| Hepatocyte nuclear factor 1-alpha | HNF1A | predictive text mining | P20823 |
| Inositol-pentakisphosphate 2-kinase | IPPK | predictive text mining | Q9H8X2 |
| Intraflagellar transport protein 172 homology | IFT172 | predictive text mining interologs mapping | Q9ULP1 |
| Intraflagellar transport protein 20 homolog | IFT20 | predictive text mining | Q8IY31 |
| Intraflagellar transport protein 46 homolog | IFT46 | biochemical | Q9NQC8 |
| Intraflagellar transport protein 52 homolog | IFT52 | interologs mapping | Q9Y366 |
| Intraflagellar transport protein 57 homolog | IFT57 | predictive text mining | Q9NWB7 |
| Intraflagellar transport protein 80 homolog | IFT80 | interologs mapping | Q9P2H3 |
| Intraflagellar transport protein 81 homolog | IFT81 | biochemical | Q8WYA0 |
| Intraflagellar transport portein 88 homolog | IFT88 | affinity chromatography technology | Q8N719 |
| Kinesin-like protein KIF3A | KIF3A | predictive text mining interologs mapping | Q9Y496 |
| Lambda-crystallin homolog | CRYL1 | predictive text mining | Q9Y2S2 |
| Lymphoid enhancer-binding factor 1 | LEF1 | predictive text mining | Q9UJU2 |
| PAB-dependent poly(A)-specific ribonuclease subunit 3 | PAN3 | interologs mapping | Q58A45 |
| Polycystin-1 | PDK1 | predictive text mining interologs mapping | P98161 |
| Proline-rich and coiled-coil-containing protein 2 | PRRC2A | coimmunoprecipitation two hybrid | P48634 |
| Prostaglandin E2 receptor EP2 subtype | PTGER2 | predictive text mining | P43116 |
| Reticulon-4-interacting protein 1, mitochondrial | RTN4IP1 | interologs mapping | Q8WWV3 |
| Serine/threonine-protein kinase LATS2 | LATS2 | predictive text mining | Q9P2X1 |
| Sodium/hydrogen exchanger 8 | SLC9A8 | interologs mapping | Q9Y2E8 |
| Survival of motor neuron-related-splicing factor 30 | SMNDC1 | anti bait coimmunoprecipitation two hybrid | O75940 |
| TBCC domain-containing protein 1 | TBCCD1 | fluorescence microscopy experimental interaction detection | Q9NVR7 |
| Hepatocyte nuclear factor 1-beta | HNF1B | predictive text mining | P35680 |
| Transcription factor 7 | TCF7 | predictive text mining | Q9UKI4 |
| Transcriptional activator GLI3 | GLI3) | experimental knowledge based | P10071 |
| Transforming acidic coiled-coil-containing protein 1 | TACC1 | predictive text mining | Q9UPP9 |
| t-complex testis expressed 1 domain containing 4 | TCTEX1D4 | Two hybrid | Q5JR98 |
| X-linked retinitis pigmentosa GTPase regulator | RPGR | experimental interaction detection two hybrid | Q92834 |
| Zinc finger MYM-type protein 2 | ZMYM2 | predictive text mining | Q9UBW7 |
| Zinc finger protein GLI2 | GLI2 | experimental knowledge based | P10070 |